Working hours: Mon - Fri | 08:00 - 17:00HOTLINE: 0867 95 7568
Technical Article

ORGANIC MATTER, BOTTOM SLUDGE – THE CAUSE OF MANY UNDESIRABLE PROBLEMS IN PONDS

As the accumulation of Nitrogen and Phosphorus increases, the N:P ratio will change (N≈P). This ratio is conducive to the growth of harmful algae (blue-green algae, dinoflagellates, and euglenoids).

ProtocolShrimpNovember 21, 2018👁 266 views
Click to listen to an AI-narrated summary
Full Article
ORGANIC MATTER, BOTTOM SLUDGE – THE CAUSE OF MANY UNDESIRABLE PROBLEMS IN PONDS

Formation of organic matter and pond bottom sludge in aquaculture ponds

The main source of organic matter in aquaculture ponds is feed, because feed often contains very high protein content (mainly Nitrogen and Phosphorus) and the shrimp's absorption capacity is limited. This leads to an increasing accumulation of organic matter through uneaten feed and shrimp feces, along with its decomposition, creating very negative impacts on pond water quality.

When Nitrogen and Phosphorus accumulate increasingly, the N:P ratio changes (N≈P). This ratio is favorable for the growth of harmful algae (blue-green algae, dinoflagellates, and euglenoids).

Additionally, other sources of organic matter accumulated in the pond include: shrimp molts, suspended silt from soil, dead algae and plankton, undissolved mineral lime during use.

Organic decomposition processes in the pond also make the water viscous (heavy water), creating a lot of suspended organic matter (a cause of oxygen depletion, dense algae blooms, and algal crashes).

Organic_matter_1
 

Pond with decaying algae

Another point of concern is the concentration of dissolved organic matter in the source water. In practice, some long-standing aquaculture areas using groundwater show high levels of dissolved organic matter (algae often grow very rapidly during water exchange).

Negative impacts on the environment and farmed shrimp

- Harmful algae thrive when the N:P ratio changes

Increasing accumulation of N and P leads to eutrophication and nutrient imbalance, creating a favorable environment for the growth of blue-green algae, dinoflagellates, and euglenoids, negatively impacting the pond.

It is important to note the appearance of euglenoids, an indicator algae species for a very poor pond ecosystem.

When these algae species proliferate and then crash, it becomes a major problem because the decomposition of algal biomass produces many toxins, often causing shrimp to suffer from gut-related diseases and changes in hepatopancreas color.

Organic_matter_2
 

Pond heavily overgrown with blue-green algae

- Toxic gases NH3, NO2, H2S

NH3 (Ammonia) The first product in the nitrogen conversion process (NH4+/NH3). When water quality deteriorates and pH levels are high >8.3, the conversion equilibrium shifts more towards Ammonia (increasing NH3 concentration), which is toxic to farmed shrimp.

NO2 (Nitrite) is produced when the nitrification process cannot occur due to low dissolved oxygen (<2mg/L).

Nitrosomonas and Nitro bacter, two types of bacteria representing the nitrification process, but they are often unstable in terms of population density and biomass production (very slow biomass growth over a long period) due to their environmental sensitivity and immobility.

The toxicity of NO2 increases in low salinity water and vice versa.

Organic_matter_3
 

Black tiger shrimp mortality due to high toxic gases NH3, NO2

H2S (Hydrogen sulfide) The bottom sludge layer will increase during cultivation (especially in earthen ponds), creating anaerobic zones. H2S is produced through anaerobic decomposition. Conversely to NH3, H2S exhibits high toxicity at low pH when HS- => H2S.

H2S is highly toxic to farmed shrimp even at very low concentrations.

High accumulation of pond bottom sludge provides a favorable environment for harmful bacteria to proliferate rapidly, causing diseases in shrimp.

- Dissolved Oxygen: The decomposition of organic matter and suspended organic particles in the pond consumes a lot of oxygen, reducing dissolved oxygen levels.

- Poorly fluctuating water environment affects health, causes disease, and increases shrimp susceptibility to disease.

When the pond environment changes and water quality parameters fluctuate (high temperature, low temperature, dense algal blooms, algal crashes, heavy metals, organic matter pollution, etc.), all these factors affect the health of farmed shrimp.

The hepatopancreas and gut are two extremely important organs and are highly sensitive to the pond environment. Therefore, managing shrimp health based on these two criteria is a priority.

Organic_matter_4
 

Shrimp suffering from gut disease, affecting hepatopancreas and poor coloration.

 
Organic_matter_5
 

Weather effects (heavy rain) lead to poor shrimp hepatopancreas, even with full guts.

A significant environmental degradation will lead to shrimp diseases. This inevitably reduces productivity, increases treatment costs, and results in economic losses.

Eng. Tran Cong Viet

Quick Q&A

Frequently asked questions on this topic

What does "ORGANIC MATTER, BOTTOM SLUDGE – THE CAUSE OF MANY UNDESIRABLE PROBLEMS IN PONDS" cover?

As the accumulation of Nitrogen and Phosphorus increases, the N:P ratio will change (N≈P). This ratio is conducive to the growth of harmful algae (blue-green algae, dinoflagellates, and euglenoids).

Which species does this article apply to?

Shrimp — Gut health, Hepatopancreas, Water & environment

Related Products

Products linked to this topic

PRO GUT
ShrimpThan Vuong Blue

PRO GUT

Premium digestive probiotics specifically for shrimp farming in lined ponds

MAX 4000
tom / ca / ocThan Vuong Blue

MAX 4000

Probiotic that helps reduce the toxic gases NH3, H2S and NO2

HERB GUARD
ShrimpThan Vuong Blue

HERB GUARD

Enhance liver function, improve color of hepatopancreas

More Reading

Related technical articles

CHANGES IN GUT MICROBIOTA DUE TO GLOBAL WARMING. REGULATING HOST HEALTH AND DISEASE STATUS IN POIKILOTHERMIC ANIMALS
Research Insight•Shrimp•February 28, 2026

CHANGES IN GUT MICROBIOTA DUE TO GLOBAL WARMING. REGULATING HOST HEALTH AND DISEASE STATUS IN POIKILOTHERMIC ANIMALS

Global warming alters the gut microbiota of Pacific whiteleg shrimp by restructuring enterotypes, increasing the risk of diseases su[...]

ANALYSIS OF THE SHRIMP HEPATOPANCREAS TRANSCRIPTOME UNDER EXPERIMENTAL EHP INFECTION CONDITIONS
Research Insight•Shrimp•January 20, 2026

ANALYSIS OF THE SHRIMP HEPATOPANCREAS TRANSCRIPTOME UNDER EXPERIMENTAL EHP INFECTION CONDITIONS

EHP is a specialized intracellular parasite, primarily parasitizing the hepatopancreas of shrimp, causing severe growth retardation.[...]

HEPATOPANCREAS PROTECTION – THE KEY TO IMPROVING SUCCESS RATES IN SHRIMP FARMING
Solution Track•Shrimp•January 6, 2026

HEPATOPANCREAS PROTECTION – THE KEY TO IMPROVING SUCCESS RATES IN SHRIMP FARMING

The hepatopancreas is the most important and multi-functional organ in shrimp, performing roles such as: digestion – nutrient absorp[...]

Ask Than Vuong

Aquaculture technical assistant

Hello there 👋

Describe your pond issue or pick a question below.